Commit 1cc1e91e by rjoosten

Textual corrections on about and formatting corrections on download.

parent cbf58f78
...@@ -171,9 +171,9 @@ AUTHOR Y.Patskovsky; R.Toro; M.Gilmore; S.Miller; J.M.Sauder; S.C.Almo; S.K.B ...@@ -171,9 +171,9 @@ AUTHOR Y.Patskovsky; R.Toro; M.Gilmore; S.Miller; J.M.Sauder; S.C.Almo; S.K.B
that is not yet marked, and its partner are both marked <em>b</em>, etcetera. Unbridged cysteines remain that is not yet marked, and its partner are both marked <em>b</em>, etcetera. Unbridged cysteines remain
marked as <em>C</em>.</p> marked as <em>C</em>.</p>
<h3>S (first column in STRUCTURE block)</h3> <h3>STRUCTURE</h3>
<p>The one-letter summary of secondary structure, intended to approximate crystallographers' intuition, <p>The first column (under the <em>S</em>) gives aone-letter summary of secondary structure, intended to approximate
based on columns 19-38, which are the principal crystallographers' intuition. This summary is based on the next 8 columns, which are the principal
result of DSSP analysis of the atomic coordinates. More details in the Kabsch and Sander paper.</p> result of DSSP analysis of the atomic coordinates. More details in the Kabsch and Sander paper.</p>
<h3>BP1 and BP2</h3> <h3>BP1 and BP2</h3>
...@@ -182,7 +182,7 @@ AUTHOR Y.Patskovsky; R.Toro; M.Gilmore; S.Miller; J.M.Sauder; S.C.Almo; S.K.B ...@@ -182,7 +182,7 @@ AUTHOR Y.Patskovsky; R.Toro; M.Gilmore; S.Miller; J.M.Sauder; S.C.Almo; S.K.B
<h3>ACC</h3> <h3>ACC</h3>
<p>Water exposed surface in Angstrom**2. <em>Note:</em>The values for solvent exposure may not mean what you <p>Water exposed surface in &Aring;ngstr&ouml;m<sup>2</sup>. <em>Note:</em>The values for solvent exposure may not mean what you
think: think:
<ul> <ul>
<li>Effects leading to larger than expected values: solvent exposure calculation ignores unusual <li>Effects leading to larger than expected values: solvent exposure calculation ignores unusual
......
...@@ -35,16 +35,16 @@ ...@@ -35,16 +35,16 @@
<article> <article>
<h2>Downloading ready-made DSSP annotations</h2> <h2>Downloading ready-made DSSP annotations</h2>
For your convenience we have already run DSSP on the entire Protein Data Bank. All entries are available in <a z2:href="@{/about#mmCIF}">mmCIF format</a> <p>For your convenience we have already run DSSP on the entire Protein Data Bank. All entries are available in <a z2:href="@{/about#mmCIF}">mmCIF format</a>
and, if they fit, in the <a z2:href="@{/about#DSSP}">legacy DSSP format.</a> and, if they fit, in the <a z2:href="@{/about#DSSP}">legacy DSSP format.</a></p>
<h2>Manually download (single entries) via the website or using <code>wget</code>:</h2> <h3>Manually download (single entries) via the website or using <code>wget</code>:</h3>
<ul> <ul>
<li><code>wget https://pdb-redo.eu/dssp/9xyz.cif.gz</code> downloads annotated mmCIF file</li> <li><code>wget https://pdb-redo.eu/dssp/9xyz.cif.gz</code> downloads annotated mmCIF file</li>
<li><code>wget https://pdb-redo.eu/dssp/9xyz.dssp</code> downloads the legacy DSSP file (if available)</li> <li><code>wget https://pdb-redo.eu/dssp/9xyz.dssp</code> downloads the legacy DSSP file (if available)</li>
</ul> </ul>
<h2>Download entire DSSP databank using <code>rsync</code>:</h2> <h3>Download entire DSSP databank using <code>rsync</code>:</h3>
<ul> <ul>
<li><code>rsync -av rsync://rsync.pdb-redo.eu/dssp/ dssp/</code> downloads the entire archive. <li><code>rsync -av rsync://rsync.pdb-redo.eu/dssp/ dssp/</code> downloads the entire archive.
</li> </li>
......
Markdown is supported
0% or
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment