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libcifpp
Commit 072be253 by Maarten L. Hekkelman
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install update script

parent 5f50429c
Showing with 57 additions and 35 deletions
CMakeLists.txt
# SPDX-License-Identifier: BSD-2-Clause
# Copyright (c) 2021 NKI/AVL, Netherlands Cancer Institute
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions are met:
# 1. Redistributions of source code must retain the above copyright notice, this
# list of conditions and the following disclaimer
# 2. Redistributions in binary form must reproduce the above copyright notice,
# this list of conditions and the following disclaimer in the documentation
# and/or other materials provided with the distribution.
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
# ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
# WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
# DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
# ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
# (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
# ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
# (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
# SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
cmake_minimum_required(VERSION 3.16) cmake_minimum_required(VERSION 3.16)
# set the project name # set the project name
...@@ -20,13 +44,13 @@ set(CMAKE_CXX_STANDARD 17) ...@@ -20,13 +44,13 @@ set(CMAKE_CXX_STANDARD 17)
set(CMAKE_CXX_STANDARD_REQUIRED ON) set(CMAKE_CXX_STANDARD_REQUIRED ON)
if(CMAKE_COMPILER_IS_GNUCC) if(CMAKE_COMPILER_IS_GNUCC)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra -Wno-unused-parameter") set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wall -Wextra -Wno-unused-parameter")
endif() endif()
if(MSVC) if(MSVC)
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} /W4") set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} /W4")
endif() endif()
# Build shared libraries by default (not my cup of tea, but hey) # Do not build shared libraries by default
option(BUILD_SHARED_LIBS "Build a shared library instead of a static one" OFF) option(BUILD_SHARED_LIBS "Build a shared library instead of a static one" OFF)
set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON) set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS ON)
...@@ -73,19 +97,6 @@ if(MSVC) ...@@ -73,19 +97,6 @@ if(MSVC)
message(WARNING "The library and auxiliary files will be installed in $ENV{LOCALAPPDATA}/${PROJECT_NAME}") message(WARNING "The library and auxiliary files will be installed in $ENV{LOCALAPPDATA}/${PROJECT_NAME}")
set(CMAKE_INSTALL_PREFIX "$ENV{LOCALAPPDATA}/${PROJECT_NAME}" CACHE PATH "..." FORCE) set(CMAKE_INSTALL_PREFIX "$ENV{LOCALAPPDATA}/${PROJECT_NAME}" CACHE PATH "..." FORCE)
endif() endif()
# Find out the processor type for the target
if(${CMAKE_SYSTEM_PROCESSOR} STREQUAL "AMD64")
set(COFF_TYPE "x64")
elseif(${CMAKE_SYSTEM_PROCESSOR} STREQUAL "i386")
set(COFF_TYPE "x86")
elseif(${CMAKE_SYSTEM_PROCESSOR} STREQUAL "ARM64")
set(COFF_TYPE "arm64")
else()
message(FATAL_ERROR "Unsupported or unknown processor type ${CMAKE_SYSTEM_PROCESSOR}")
endif()
set(COFF_SPEC "--coff=${COFF_TYPE}")
endif() endif()
if(UNIX AND NOT APPLE) if(UNIX AND NOT APPLE)
...@@ -96,10 +107,11 @@ if(UNIX AND NOT APPLE) ...@@ -96,10 +107,11 @@ if(UNIX AND NOT APPLE)
endif() endif()
endif() endif()
# Optionally use mrc to create resources # Optionally use resources, created with mrc
find_program(MRC mrc HINTS "$ENV{LOCALAPPDATA}/mrc" "$ENV{HOME}/.local/bin" "${CMAKE_INSTALL_PREFIX}/../mrc" "/usr/local/bin")
find_package(mrc)
if(MRC) if(MRC_FOUND)
option(USE_RSRC "Use mrc to create resources" ON) option(USE_RSRC "Use mrc to create resources" ON)
else() else()
message(WARNING "Not using resources since mrc was not found") message(WARNING "Not using resources since mrc was not found")
...@@ -107,8 +119,6 @@ endif() ...@@ -107,8 +119,6 @@ endif()
if(USE_RSRC STREQUAL "ON") if(USE_RSRC STREQUAL "ON")
set(USE_RSRC 1) set(USE_RSRC 1)
message("Using resources compiled with ${MRC}")
add_compile_definitions(USE_RSRC) add_compile_definitions(USE_RSRC)
endif() endif()
...@@ -119,7 +129,7 @@ set(THREADS_PREFER_PTHREAD_FLAG) ...@@ -119,7 +129,7 @@ set(THREADS_PREFER_PTHREAD_FLAG)
find_package(Threads) find_package(Threads)
set (Boost_DETAILED_FAILURE_MSG ON) set (Boost_DETAILED_FAILURE_MSG ON)
find_package(Boost 1.71.0 REQUIRED COMPONENTS system iostreams regex date_time program_options) find_package(Boost 1.70.0 REQUIRED COMPONENTS system iostreams regex date_time program_options)
find_package(ZLIB) find_package(ZLIB)
find_package(BZip2) find_package(BZip2)
...@@ -349,13 +359,6 @@ option(CIFPP_BUILD_TESTS "Build test exectuables" OFF) ...@@ -349,13 +359,6 @@ option(CIFPP_BUILD_TESTS "Build test exectuables" OFF)
if(CIFPP_BUILD_TESTS) if(CIFPP_BUILD_TESTS)
if(USE_RSRC)
add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/cifpp_test_rsrc.obj
COMMAND ${MRC} -o ${CMAKE_CURRENT_BINARY_DIR}/cifpp_test_rsrc.obj ${CMAKE_SOURCE_DIR}/rsrc/mmcif_pdbx_v50.dic ${COFF_SPEC}
)
set(CIFPP_TEST_RESOURCE ${CMAKE_CURRENT_BINARY_DIR}/cifpp_test_rsrc.obj)
endif()
list(APPEND CIFPP_tests list(APPEND CIFPP_tests
# pdb2cif # pdb2cif
rename-compound rename-compound
...@@ -365,7 +368,11 @@ if(CIFPP_BUILD_TESTS) ...@@ -365,7 +368,11 @@ if(CIFPP_BUILD_TESTS)
set(CIFPP_TEST "${CIFPP_TEST}-test") set(CIFPP_TEST "${CIFPP_TEST}-test")
set(CIFPP_TEST_SOURCE "${CMAKE_CURRENT_SOURCE_DIR}/test/${CIFPP_TEST}.cpp") set(CIFPP_TEST_SOURCE "${CMAKE_CURRENT_SOURCE_DIR}/test/${CIFPP_TEST}.cpp")
add_executable(${CIFPP_TEST} ${CIFPP_TEST_SOURCE} ${CIFPP_TEST_RESOURCE}) add_executable(${CIFPP_TEST} ${CIFPP_TEST_SOURCE})
if(USE_RSRC)
mrc_target_resources(${CIFPP_TEST} ${CMAKE_SOURCE_DIR}/rsrc/mmcif_pdbx_v50.dic)
endif()
target_include_directories(${CIFPP_TEST} PRIVATE target_include_directories(${CIFPP_TEST} PRIVATE
${CMAKE_CURRENT_SOURCE_DIR}/include ${CMAKE_CURRENT_SOURCE_DIR}/include
...@@ -399,4 +406,20 @@ if(CIFPP_BUILD_TESTS) ...@@ -399,4 +406,20 @@ if(CIFPP_BUILD_TESTS)
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/test) WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/test)
endforeach() endforeach()
endif() endif()
\ No newline at end of file
# Optionally install the update scripts for CCD and dictionary files
if(UNIX)
option(INSTALL_UPDATE_SCRIPT "Install the script to update CCD and dictionary files" OFF)
if(INSTALL_UPDATE_SCRIPT)
set(CIFPP_CACHE_DIR "/var/cache/libcifpp")
set(CIFPP_CRON_DIR "$ENV{DESTDIR}/etc/cron.weekly")
configure_file(${CMAKE_SOURCE_DIR}/tools/update-dictionary-script.in update-dictionary-script @ONLY)
install(FILES ${CMAKE_CURRENT_BINARY_DIR}/update-dictionary-script DESTINATION ${CIFPP_CRON_DIR})
target_compile_definitions(cifpp PUBLIC CACHE_DIR="${CIFPP_CACHE_DIR}")
endif()
endif()
tools/update-dictionary-script.in
...@@ -17,7 +17,7 @@ if [ "$update" != "true" ] ; then ...@@ -17,7 +17,7 @@ if [ "$update" != "true" ] ; then
fi fi
# if cache directory doesn't exist, exit. # if cache directory doesn't exist, exit.
if ! [ -d @DATA_CACHE_DIR@ ]; then if ! [ -d @CIFPP_CACHE_DIR@ ]; then
exit exit
fi fi
...@@ -43,5 +43,5 @@ fetch_dictionary () { ...@@ -43,5 +43,5 @@ fetch_dictionary () {
# fetch the dictionaries # fetch the dictionaries
fetch_dictionary "@DATA_CACHE_DIR@/mmcif_pdbx_v50.dic" "https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic.gz" fetch_dictionary "@CIFPP_CACHE_DIR@/mmcif_pdbx_v50.dic" "https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic.gz"
fetch_dictionary "@DATA_CACHE_DIR@/components.cif" "ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz" fetch_dictionary "@CIFPP_CACHE_DIR@/components.cif" "ftp://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz"
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