update for configure

GNUmakefile.in

@@ -30,8 +30,7 @@ firstTarget: all
 CXX					= @CXX@
 CXX					= @CXX@
 CXXFLAGS			= @CXXFLAGS@ @BOOST_CPPFLAGS@ @LIBBZ2_CPPFLAGS@
 CXXFLAGS			= @CXXFLAGS@ @BOOST_CPPFLAGS@ @LIBBZ2_CPPFLAGS@
 LDFLAGS				= @LDFLAGS@ @LIBS@ @BOOST_LDFLAGS@ @LIBBZ2_LDFLAGS@
 LDFLAGS				= @LDFLAGS@ @LIBS@ @BOOST_LDFLAGS@ @LIBBZ2_LDFLAGS@
-LIBS				= @BOOST_IOSTREAMS_LIB@ \
-					  @LIBS@
+LIBS				= @LIBS@
 
 
 prefix				= @prefix@
 prefix				= @prefix@
 exec_prefix			= @exec_prefix@
 exec_prefix			= @exec_prefix@

configure.ac

@@ -33,20 +33,9 @@ AC_CHECK_HEADER_STDBOOL
 AC_CHECK_TYPES([ptrdiff_t])
 AC_CHECK_TYPES([ptrdiff_t])
 AC_PROG_MAKE_SET
 AC_PROG_MAKE_SET
 
 
-AC_ARG_VAR([USE_RSRC], [Use resources to store internal data, requires mrc])
-AC_ARG_VAR([MRC], [Specify a location for the mrc executable])
-
-dnl We really like to use mrc
-if test "x$MRC" = "x"; then
-	AC_PATH_PROG([MRC], [mrc])
-fi
-if test "x$MRC" = "x"; then
-	AC_MSG_WARN([mrc not found, building without support for resources.])
-else
-	USE_RSRC=1
-fi
-
-AX_BOOST_BASE([1.71])
+AX_BOOST_BASE([1.71], [], [
+	AC_MSG_ERROR([Sorry, your boost is not found or not up-to-date.])
+])
 AX_BOOST_REGEX
 AX_BOOST_REGEX
 
 
 AX_CHECK_LIBRARY([LIBZ], [zlib.h], [z], [],
 AX_CHECK_LIBRARY([LIBZ], [zlib.h], [z], [],

include/cif++/CifUtils.hpp

@@ -252,10 +252,10 @@ class rsrc_loader
 
 
 	static void init(std::initializer_list<rsrc_loader_info> loaders =
 	static void init(std::initializer_list<rsrc_loader_info> loaders =
 	{
 	{
+		{ rsrc_loader_type::file, "." },
 #if USE_RSRC
 #if USE_RSRC
-		{ rsrc_loader_type::mrsrc, "", { gResourceIndex, gResourceData, gResourceName } },
+		{ rsrc_loader_type::mrsrc, "", { gResourceIndex, gResourceData, gResourceName } }
 #endif
 #endif
-		{ rsrc_loader_type::file, "." }
 	})
 	})
 	{
 	{
 		assert(not s_instance);
 		assert(not s_instance);

include/cif++/Config.hpp.in

-/*-
- * SPDX-License-Identifier: BSD-2-Clause
- * 
- * Copyright (c) 2020 NKI/AVL, Netherlands Cancer Institute
- * 
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- * 
- * 1. Redistributions of source code must retain the above copyright notice, this
- *    list of conditions and the following disclaimer
- * 2. Redistributions in binary form must reproduce the above copyright notice,
- *    this list of conditions and the following disclaimer in the documentation
- *    and/or other materials provided with the distribution.
- * 
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
- * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
- * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
- * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
- * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
- * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- */
-
-#pragma once
-
-#if defined(_MSC_VER)
-
-// These are Microsoft Visual C++ special settings
-// the iso646 file contains the C++ keywords that are
-// otherwise not recognized.
-#include <ciso646>
-#define snprintf _snprintf
-
-// Disable some warnings
-#pragma warning (disable : 4996)
-#pragma warning (disable : 4355)
-#endif
+/* include/cif++/Config.hpp.in.  Generated from configure.ac by autoheader.  */
 
 
 /* define if the Boost library is available */
 /* define if the Boost library is available */
 #undef HAVE_BOOST
 #undef HAVE_BOOST
 
 
-/* define if the Boost::IOStreams library is available */
-#undef HAVE_BOOST_IOSTREAMS
-
 /* define if the Boost::Regex library is available */
 /* define if the Boost::Regex library is available */
 #undef HAVE_BOOST_REGEX
 #undef HAVE_BOOST_REGEX
 
 
-/* define if the Boost::Thread library is available */
-#undef HAVE_BOOST_THREAD
-
 /* define if the compiler supports basic C++17 syntax */
 /* define if the compiler supports basic C++17 syntax */
 #undef HAVE_CXX17
 #undef HAVE_CXX17
 
 
@@ -69,10 +24,6 @@
 /* Define to 1 if LIBZ is found */
 /* Define to 1 if LIBZ is found */
 #undef HAVE_LIBZ
 #undef HAVE_LIBZ
 
 
-/* Define to 1 if your system has a GNU libc compatible `malloc' function, and
-   to 0 otherwise. */
-#undef HAVE_MALLOC
-
 /* Define to 1 if you have the <memory.h> header file. */
 /* Define to 1 if you have the <memory.h> header file. */
 #undef HAVE_MEMORY_H
 #undef HAVE_MEMORY_H
 
 

src/CifUtils.cpp

@@ -33,6 +33,8 @@
 #include <atomic>
 #include <atomic>
 #include <mutex>
 #include <mutex>
 #include <thread>
 #include <thread>
+#include <filesystem>
+#include <fstream>
 
 
 #if defined(_MSC_VER)
 #if defined(_MSC_VER)
 #define TERM_WIDTH 80
 #define TERM_WIDTH 80
@@ -48,6 +50,7 @@
 #include "cif++/CifUtils.hpp"
 #include "cif++/CifUtils.hpp"
 
 
 namespace ba = boost::algorithm;
 namespace ba = boost::algorithm;
+namespace fs = std::filesystem;
 
 
 namespace cif
 namespace cif
 {
 {
@@ -732,6 +735,58 @@ rsrc mrsrc_rsrc_loader_impl::load(const std::string& path) const
 	return { m_data + node->m_data, node->m_size };
 	return { m_data + node->m_data, node->m_size };
 }
 }
 
 
+struct mrsrc_file_loader_impl : public rsrc_loader_impl
+{
+	mrsrc_file_loader_impl(const rsrc_loader_info& info);
+
+	virtual rsrc load(const std::string& path) const;
+
+	fs::path m_rsrc_dir;
+	mutable std::mutex m_mutex;
+	mutable std::map<fs::path,std::string> m_cache;
+};
+
+mrsrc_file_loader_impl::mrsrc_file_loader_impl(const rsrc_loader_info& info)
+	: m_rsrc_dir(info.info)
+{
+	if (not fs::is_directory(m_rsrc_dir))
+	{
+		std::cerr << "The directory " << info.info << " does not exist" << std::endl
+				  << "Loading dictionaries will most likely fail" << std::endl;
+	}
+}
+
+rsrc mrsrc_file_loader_impl::load(const std::string& path) const
+{
+	std::unique_lock lock(m_mutex);
+	
+	fs::path p = m_rsrc_dir / path;
+
+	if (fs::exists(p))
+	{
+		auto i = m_cache.find(p);
+
+		if (i == m_cache.end())
+		{
+			std::ostringstream s;
+			std::ifstream f(p);
+			if (not f.is_open())
+				throw std::runtime_error("Could not open " + p.string());
+
+			std::string line;
+			while (std::getline(f, line))
+				s << line << std::endl;
+			
+			std::string data = s.str();
+			std::tie(i, std::ignore) = m_cache.emplace(p, data);
+		}
+
+		return { i->second.c_str(), i->second.length() };
+	}
+
+	return {};
+}
+
 rsrc_loader::rsrc_loader(const std::initializer_list<rsrc_loader_info>& loaders)
 rsrc_loader::rsrc_loader(const std::initializer_list<rsrc_loader_info>& loaders)
 {
 {
 	for (auto& l: loaders)
 	for (auto& l: loaders)
@@ -741,6 +796,7 @@ rsrc_loader::rsrc_loader(const std::initializer_list<rsrc_loader_info>& loaders)
 			switch (l.type)
 			switch (l.type)
 			{
 			{
 				case rsrc_loader_type::file:
 				case rsrc_loader_type::file:
+					m_loaders.push_back(new mrsrc_file_loader_impl(l));
 					break;
 					break;
 
 
 				case rsrc_loader_type::mrsrc:
 				case rsrc_loader_type::mrsrc: