writing sugar trees

.gitignore

@@ -15,4 +15,4 @@ config.log
 libtool
 libtool
 rsrc/lib-version.txt
 rsrc/lib-version.txt
 version-info*.txt
 version-info*.txt
-src/revision.hpp
+src/revision.hpp
\ No newline at end of file

GNUmakefile.in

@@ -196,7 +196,7 @@ $(1)_OBJECTS = $$(OBJDIR)/$(1)-test.o
 
 
 test/$(1)-test: $(LIB_TARGET) $$($(1)_OBJECTS)
 test/$(1)-test: $(LIB_TARGET) $$($(1)_OBJECTS)
 	@ echo ">>> building $(1)-test"
 	@ echo ">>> building $(1)-test"
-	$(LIBTOOL) --silent --tag=CXX --mode=link $(CXX) $(CXXFLAGS) $(LDFLAGS) -o $$@ $$($(1)_OBJECTS) -L.libs -lcif++ -lboost_date_time $(LIBS)
+	$(LIBTOOL) --silent --tag=CXX --mode=link $(CXX) $(CXXFLAGS) $(LDFLAGS) -o $$@ $$($(1)_OBJECTS) -L.libs -lcif++ $(LIBS)
 
 
 .PHONY: $(1)-test
 .PHONY: $(1)-test
 $(1)-test: test/$(1)-test
 $(1)-test: test/$(1)-test
@@ -204,7 +204,7 @@ $(1)-test: test/$(1)-test
 
 
 endef
 endef
 
 
-TESTS = unit pdb2cif
+TESTS = unit
 
 
 $(foreach part,$(TESTS),$(eval $(call TEST_template,$(part))))
 $(foreach part,$(TESTS),$(eval $(call TEST_template,$(part))))
 
 

src/Structure.cpp

@@ -1869,7 +1869,7 @@ std::tuple<char,int,char> Structure::MapLabelToAuth(
 		found = true;
 		found = true;
 		break;
 		break;
 	}
 	}
-						
+
 	if (not found)
 	if (not found)
 	{
 	{
 		auto r = db["pdbx_nonpoly_scheme"].find(cif::Key("asym_id") == asymID);
 		auto r = db["pdbx_nonpoly_scheme"].find(cif::Key("asym_id") == asymID);

test/pdb2cif-test.cpp

-/*-
- * SPDX-License-Identifier: BSD-2-Clause
- * 
- * Copyright (c) 2020 NKI/AVL, Netherlands Cancer Institute
- * 
- * Redistribution and use in source and binary forms, with or without
- * modification, are permitted provided that the following conditions are met:
- * 
- * 1. Redistributions of source code must retain the above copyright notice, this
- *    list of conditions and the following disclaimer
- * 2. Redistributions in binary form must reproduce the above copyright notice,
- *    this list of conditions and the following disclaimer in the documentation
- *    and/or other materials provided with the distribution.
- * 
- * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
- * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
- * WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
- * DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
- * ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
- * (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
- * LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
- * ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
- * (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
- * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
- */
-
-#include <stdexcept>
-
-#include "cif++/Cif++.hpp"
-#include <cif++/Structure.hpp>
-
-
-int main(int argc, char* const argv[])
-{
-
-	cif::rsrc_loader::init({
-		{ cif::rsrc_loader_type::file, "." },
-		{ cif::rsrc_loader_type::file, "rsrc" },
-#if USE_RSRC
-		{ cif::rsrc_loader_type::mrsrc, "", { gResourceIndex, gResourceData, gResourceName } }
-#endif
-	});
-
-	mmcif::File file("pdb2b8h.ent.gz");
-
-
-	return 0;
-}
\ No newline at end of file