endl

README.md

@@ -52,7 +52,7 @@ int main(int argc, char *argv[])
 
 
     if (file.empty())
     if (file.empty())
     {
     {
-        std::cerr << "Empty file" << std::endl;
+        std::cerr << "Empty file\n";
         exit(1);
         exit(1);
     }
     }
 
 
@@ -66,8 +66,8 @@ int main(int argc, char *argv[])
     auto n = atom_site.count(cif::key("label_atom_id") == "OXT");
     auto n = atom_site.count(cif::key("label_atom_id") == "OXT");
 
 
     std::cout << "File contains " << atom_site.size() << " atoms of which "
     std::cout << "File contains " << atom_site.size() << " atoms of which "
-              << n << (n == 1 ? " is" : " are") << " OXT" << std::endl
-              << "residues with an OXT are:" << std::endl;
+              << n << (n == 1 ? " is" : " are") << " OXT\n"
+              << "residues with an OXT are:\n";
 
 
     // Loop over all atoms with atom-id "OXT" and print out some info.
     // Loop over all atoms with atom-id "OXT" and print out some info.
     // That info is extracted using structured binding in C++
     // That info is extracted using structured binding in C++
@@ -76,7 +76,7 @@ int main(int argc, char *argv[])
                 cif::key("label_atom_id") == "OXT",
                 cif::key("label_atom_id") == "OXT",
                 "label_asym_id", "label_comp_id", "label_seq_id"))
                 "label_asym_id", "label_comp_id", "label_seq_id"))
     {
     {
-        std::cout << asym << ' ' << comp << ' ' << seqnr << std::endl;
+        std::cout << asym << ' ' << comp << ' ' << seqnr << '\n';
     }
     }
 
 
     return 0;
     return 0;

src/compound.cpp

@@ -496,7 +496,7 @@ compound *compound_factory_impl::create(const std::string &id)
 		m_index = parser.index_datablocks();
 		m_index = parser.index_datablocks();
 
 
 		if (cif::VERBOSE > 1)
 		if (cif::VERBOSE > 1)
-			std::cout << " done" << std::endl;
+			std::cout << " done\n";
 
 
 		// reload the resource, perhaps this should be improved...
 		// reload the resource, perhaps this should be improved...
 		if (m_file.empty())
 		if (m_file.empty())
@@ -519,7 +519,7 @@ compound *compound_factory_impl::create(const std::string &id)
 	parser.parse_single_datablock(id, m_index);
 	parser.parse_single_datablock(id, m_index);
 
 
 	if (cif::VERBOSE > 1)
 	if (cif::VERBOSE > 1)
-		std::cout << " done" << std::endl;
+		std::cout << " done\n";
 
 
 	if (not file.empty())
 	if (not file.empty())
 	{
 	{
@@ -545,20 +545,20 @@ class local_compound_factory_impl : public compound_factory_impl
 		: compound_factory_impl(next)
 		: compound_factory_impl(next)
 		, m_local_file(file)
 		, m_local_file(file)
 	{
 	{
-		const std::regex peptideRx("(?:[lmp]-)?peptide", std::regex::icase);
+		// const std::regex peptideRx("(?:[lmp]-)?peptide", std::regex::icase);
 
 
-		for (const auto &[id, name, threeLetterCode, group] :
-			file["comp_list"]["chem_comp"].rows<std::string, std::string, std::string, std::string>("id", "name", "three_letter_code", "group"))
-		{
-			auto &rdb = m_local_file["comp_" + id];
-			if (rdb.empty())
-			{
-				std::cerr << "Missing data in restraint file for id " + id + '\n';
-				continue;
-			}
+		// for (const auto &[id, name, threeLetterCode, group] :
+		// 	file["comp_list"]["chem_comp"].rows<std::string, std::string, std::string, std::string>("id", "name", "three_letter_code", "group"))
+		// {
+		// 	auto &rdb = m_local_file["comp_" + id];
+		// 	if (rdb.empty())
+		// 	{
+		// 		// std::cerr << "Missing data in restraint file for id " + id + '\n';
+		// 		continue;
+		// 	}
 
 
-			construct_compound(rdb, id, name, threeLetterCode, group);
-		}
+		// 	construct_compound(rdb, id, name, threeLetterCode, group);
+		// }
 	}
 	}
 
 
 	compound *create(const std::string &id) override;
 	compound *create(const std::string &id) override;

src/utilities.cpp

@@ -235,7 +235,7 @@ void progress_bar_impl::print_progress()
 	float progress = static_cast<float>(m_consumed) / m_max_value;
 	float progress = static_cast<float>(m_consumed) / m_max_value;
 	
 	
 	if (width < kMinBarWidth)
 	if (width < kMinBarWidth)
-		std::cout << (100 * progress) << '%' << std::endl;
+		std::cout << (100 * progress) << "%\n";
 	else
 	else
 	{
 	{
 		uint32_t bar_width = 7 * width / 10;
 		uint32_t bar_width = 7 * width / 10;
@@ -329,7 +329,7 @@ void progress_bar_impl::print_done()
 	if (msg.length() < width)
 	if (msg.length() < width)
 		msg += std::string(width - msg.length(), ' ');
 		msg += std::string(width - msg.length(), ' ');
 
 
-	std::cout << '\r' << msg << std::endl;
+	std::cout << '\r' << msg << '\n';
 }
 }
 
 
 progress_bar::progress_bar(int64_t inMax, const std::string &inAction)
 progress_bar::progress_bar(int64_t inMax, const std::string &inAction)