Merge branch 'potential-performance-gain' into trunk

include/cif++/parser.hpp

@@ -257,7 +257,7 @@ class sac_parser
 	CIFToken m_lookahead;
 	std::string m_token_value;
 	CIFValue mTokenType;
-	std::stack<int> m_buffer;
+	std::string m_buffer;	// retract buffer, used to be a stack<char>
 };
 
 // --------------------------------------------------------------------

src/parser.cpp

@@ -68,8 +68,8 @@ int sac_parser::get_next_char()
 		result = m_source.get();
 	else
 	{
-		result = m_buffer.top();
-		m_buffer.pop();
+		result = m_buffer.back();
+		m_buffer.pop_back();
 	}
 
 	// very simple CR/LF translation into LF
@@ -77,11 +77,11 @@ int sac_parser::get_next_char()
 	{
 		int lookahead = m_source.get();
 		if (lookahead != '\n')
-			m_buffer.push(lookahead);
+			m_buffer.push_back(lookahead);
 		result = '\n';
 	}
 
-	m_token_value += static_cast<char>(result);
+	m_token_value.push_back(static_cast<char>(result));
 
 	if (result == '\n')
 		++m_line_nr;
@@ -106,7 +106,7 @@ void sac_parser::retract()
 	if (ch == '\n')
 		--m_line_nr;
 
-	m_buffer.push(ch);
+	m_buffer.push_back(ch);
 	m_token_value.pop_back();
 }
 

src/pdb/pdb2cif_remark_3.cpp

@@ -1427,10 +1427,9 @@ bool Remark3Parser::parse(const std::string &expMethod, PDBRecord *r, cif::datab
 	sort(scores.begin(), scores.end());
 
 	bool guessProgram = scores.empty() or scores.front().score < 0.9f;
-	;
 	if (guessProgram)
 	{
-		if (cif::VERBOSE >= 0)
+		if (cif::VERBOSE > 0)
 			std::cerr << "Unknown or untrusted program in REMARK 3, trying all parsers to see if there is a match" << std::endl;
 
 		tryParser(new BUSTER_TNT_Remark3Parser("BUSTER-TNT", expMethod, r, db));