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libcifpp
Commits
a74ee255
Unverified
Commit
a74ee255
authored
Nov 22, 2023
by
Maarten L. Hekkelman
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More info on missing compounds
parent
b9fc0c03
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src/compound.cpp
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a74ee255
...
@@ -591,7 +591,16 @@ void compound_factory::report_missing_compound(const std::string &compound_id)
...
@@ -591,7 +591,16 @@ void compound_factory::report_missing_compound(const std::string &compound_id)
cif
::
list_data_directories
(
std
::
clog
);
cif
::
list_data_directories
(
std
::
clog
);
std
::
clog
<<
"
\n
(Note that you can add a directory to the search paths by setting the LIBCIFPP_DATA_DIR environmental variable)
\n\n
"
;
std
::
clog
<<
"
\n
(Note that you can add a directory to the search paths by setting the LIBCIFPP_DATA_DIR environmental variable)
\n\n
"
<<
"On Linux an optional cron script might have been installed that automatically updates
\n
"
<<
"components.cif and mmCIF dictionary files. This script only works when the file
\n
"
<<
"libcifpp.conf contains an uncommented line with the text:
\n\n
"
<<
"update=true
\n\n
"
<<
"If you do not have a working cron script, you can manually update the files
\n
"
<<
"in /var/cache/libcifpp using the following commands:
\n\n
"
<<
"curl -o "
<<
CACHE_DIR
<<
"/components.cif https://ftp.wwpdb.org/pub/pdb/data/monomers/components.cif.gz
\n
"
<<
"curl -o "
<<
CACHE_DIR
<<
"/mmcif_pdbx.dic https://mmcif.wwpdb.org/dictionaries/ascii/mmcif_pdbx_v50.dic.gz
\n
"
<<
"curl -o "
<<
CACHE_DIR
<<
"/mmcif_ma.dic https://github.com/ihmwg/ModelCIF/raw/master/dist/mmcif_ma.dic
\n\n
"
;
if
(
m_impl
)
if
(
m_impl
)
{
{
...
...
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