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pdbfixer
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eb82172f
Commit
eb82172f
authored
Aug 07, 2015
by
Peter Eastman
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Fixed incorrect docstring
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6b0bc5a3
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pdbfixer/pdbfixer.py
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eb82172f
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@@ -178,9 +178,8 @@ class PDBFixer(object):
Parameters
----------
filename : str, optional, default=None
The name of the file to read. The format is determined automatically based on the filename extension. If
it ends in either ".pdbx" or ".cif", it is assumed to be a PDBx/mmCIF file. Otherwise, it is assumed to be
a PDB file.
The name of the file to read. The format is determined automatically based on the filename extension, or if
that is ambiguous, by looking at the file content.
pdbfile : file, optional, default=None
A file-like object from which the PDB file is to be read.
The file is not closed after reading.
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@@ -189,8 +188,8 @@ class PDBFixer(object):
The file is not closed after reading.
url : str, optional, default=None
A URL specifying the internet location from which the file contents should be retrieved. The format is
determined automatically by looking for a filename extension
. If the URL contains either ".pdbx" or ".cif",
it is assumed to be a PDBx/mmCIF file. Otherwise, it is assumed to be a PDB file
.
determined automatically by looking for a filename extension
in the URL, or if that is ambiguous, by looking
at the file content
.
pdbid : str, optional, default=None
A four-letter PDB code specifying the structure to be retrieved from the RCSB.
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