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pdbfixer
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eb82172f
Commit
eb82172f
authored
Aug 07, 2015
by
Peter Eastman
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Fixed incorrect docstring
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6b0bc5a3
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pdbfixer/pdbfixer.py
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pdbfixer/pdbfixer.py
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eb82172f
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@@ -178,9 +178,8 @@ class PDBFixer(object):
...
@@ -178,9 +178,8 @@ class PDBFixer(object):
Parameters
Parameters
----------
----------
filename : str, optional, default=None
filename : str, optional, default=None
The name of the file to read. The format is determined automatically based on the filename extension. If
The name of the file to read. The format is determined automatically based on the filename extension, or if
it ends in either ".pdbx" or ".cif", it is assumed to be a PDBx/mmCIF file. Otherwise, it is assumed to be
that is ambiguous, by looking at the file content.
a PDB file.
pdbfile : file, optional, default=None
pdbfile : file, optional, default=None
A file-like object from which the PDB file is to be read.
A file-like object from which the PDB file is to be read.
The file is not closed after reading.
The file is not closed after reading.
...
@@ -189,8 +188,8 @@ class PDBFixer(object):
...
@@ -189,8 +188,8 @@ class PDBFixer(object):
The file is not closed after reading.
The file is not closed after reading.
url : str, optional, default=None
url : str, optional, default=None
A URL specifying the internet location from which the file contents should be retrieved. The format is
A URL specifying the internet location from which the file contents should be retrieved. The format is
determined automatically by looking for a filename extension
. If the URL contains either ".pdbx" or ".cif",
determined automatically by looking for a filename extension
in the URL, or if that is ambiguous, by looking
it is assumed to be a PDBx/mmCIF file. Otherwise, it is assumed to be a PDB file
.
at the file content
.
pdbid : str, optional, default=None
pdbid : str, optional, default=None
A four-letter PDB code specifying the structure to be retrieved from the RCSB.
A four-letter PDB code specifying the structure to be retrieved from the RCSB.
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