rename libcif++ to libcifpp

.gitignore

@@ -8,8 +8,8 @@ GNUmakefile
 include/cif++/Config.hpp
 include/cif++/Config.hpp
 tools/symop-map-generator
 tools/symop-map-generator
 test/unit-test
 test/unit-test
-libcif++.pc
-libcif++.la
+libcifpp.pc
+libcifpp.la
 config.status
 config.status
 config.log
 config.log
 libtool
 libtool

GNUmakefile.in

@@ -22,7 +22,7 @@
 # (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 # (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
 # SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 # SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
 
-# makefile for libcif++
+# makefile for libcifpp
 
 
 .PHONY: firstTarget
 .PHONY: firstTarget
 firstTarget: all
 firstTarget: all

README.md

 [![Build Status](https://travis-ci.org/PDB-REDO/libcifpp.svg?branch=trunk)](https://travis-ci.org/PDB-REDO/libcifpp)
 [![Build Status](https://travis-ci.org/PDB-REDO/libcifpp.svg?branch=trunk)](https://travis-ci.org/PDB-REDO/libcifpp)
 
 
-libcif++
+libcifpp
 ========
 ========
 
 
 This library contains code to work with mmCIF and PDB files.
 This library contains code to work with mmCIF and PDB files.

configure

 #! /bin/sh
 #! /bin/sh
 # Guess values for system-dependent variables and create Makefiles.
 # Guess values for system-dependent variables and create Makefiles.
-# Generated by GNU Autoconf 2.69 for libcif++ 1.0.
+# Generated by GNU Autoconf 2.69 for libcifpp 1.0.
 #
 #
 # Report bugs to <m.hekkelman@nki.nl>.
 # Report bugs to <m.hekkelman@nki.nl>.
 #
 #
@@ -588,10 +588,10 @@ MFLAGS=
 MAKEFLAGS=
 MAKEFLAGS=
 
 
 # Identity of this package.
 # Identity of this package.
-PACKAGE_NAME='libcif++'
-PACKAGE_TARNAME='libcif--'
+PACKAGE_NAME='libcifpp'
+PACKAGE_TARNAME='libcifpp'
 PACKAGE_VERSION='1.0'
 PACKAGE_VERSION='1.0'
-PACKAGE_STRING='libcif++ 1.0'
+PACKAGE_STRING='libcifpp 1.0'
 PACKAGE_BUGREPORT='m.hekkelman@nki.nl'
 PACKAGE_BUGREPORT='m.hekkelman@nki.nl'
 PACKAGE_URL=''
 PACKAGE_URL=''
 
 
@@ -1319,7 +1319,7 @@ if test "$ac_init_help" = "long"; then
   # Omit some internal or obsolete options to make the list less imposing.
   # Omit some internal or obsolete options to make the list less imposing.
   # This message is too long to be a string in the A/UX 3.1 sh.
   # This message is too long to be a string in the A/UX 3.1 sh.
   cat <<_ACEOF
   cat <<_ACEOF
-\`configure' configures libcif++ 1.0 to adapt to many kinds of systems.
+\`configure' configures libcifpp 1.0 to adapt to many kinds of systems.
 
 
 Usage: $0 [OPTION]... [VAR=VALUE]...
 Usage: $0 [OPTION]... [VAR=VALUE]...
 
 
@@ -1368,7 +1368,7 @@ Fine tuning of the installation directories:
   --infodir=DIR           info documentation [DATAROOTDIR/info]
   --infodir=DIR           info documentation [DATAROOTDIR/info]
   --localedir=DIR         locale-dependent data [DATAROOTDIR/locale]
   --localedir=DIR         locale-dependent data [DATAROOTDIR/locale]
   --mandir=DIR            man documentation [DATAROOTDIR/man]
   --mandir=DIR            man documentation [DATAROOTDIR/man]
-  --docdir=DIR            documentation root [DATAROOTDIR/doc/libcif--]
+  --docdir=DIR            documentation root [DATAROOTDIR/doc/libcifpp]
   --htmldir=DIR           html documentation [DOCDIR]
   --htmldir=DIR           html documentation [DOCDIR]
   --dvidir=DIR            dvi documentation [DOCDIR]
   --dvidir=DIR            dvi documentation [DOCDIR]
   --pdfdir=DIR            pdf documentation [DOCDIR]
   --pdfdir=DIR            pdf documentation [DOCDIR]
@@ -1385,7 +1385,7 @@ fi
 
 
 if test -n "$ac_init_help"; then
 if test -n "$ac_init_help"; then
   case $ac_init_help in
   case $ac_init_help in
-     short | recursive ) echo "Configuration of libcif++ 1.0:";;
+     short | recursive ) echo "Configuration of libcifpp 1.0:";;
    esac
    esac
   cat <<\_ACEOF
   cat <<\_ACEOF
 
 
@@ -1515,7 +1515,7 @@ fi
 test -n "$ac_init_help" && exit $ac_status
 test -n "$ac_init_help" && exit $ac_status
 if $ac_init_version; then
 if $ac_init_version; then
   cat <<\_ACEOF
   cat <<\_ACEOF
-libcif++ configure 1.0
+libcifpp configure 1.0
 generated by GNU Autoconf 2.69
 generated by GNU Autoconf 2.69
 
 
 Copyright (C) 2012 Free Software Foundation, Inc.
 Copyright (C) 2012 Free Software Foundation, Inc.
@@ -2120,7 +2120,7 @@ cat >config.log <<_ACEOF
 This file contains any messages produced by compilers while
 This file contains any messages produced by compilers while
 running configure, to aid debugging if configure makes a mistake.
 running configure, to aid debugging if configure makes a mistake.
 
 
-It was created by libcif++ $as_me 1.0, which was
+It was created by libcifpp $as_me 1.0, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
 
   $ $0 $@
   $ $0 $@
@@ -17014,7 +17014,7 @@ else
 fi
 fi
 
 
 
 
-ac_config_files="$ac_config_files GNUmakefile libcif++.pc"
+ac_config_files="$ac_config_files GNUmakefile libcifpp.pc"
 
 
 cat >confcache <<\_ACEOF
 cat >confcache <<\_ACEOF
 # This file is a shell script that caches the results of configure
 # This file is a shell script that caches the results of configure
@@ -17522,7 +17522,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
 # report actual input values of CONFIG_FILES etc. instead of their
 # report actual input values of CONFIG_FILES etc. instead of their
 # values after options handling.
 # values after options handling.
 ac_log="
 ac_log="
-This file was extended by libcif++ $as_me 1.0, which was
+This file was extended by libcifpp $as_me 1.0, which was
 generated by GNU Autoconf 2.69.  Invocation command line was
 generated by GNU Autoconf 2.69.  Invocation command line was
 
 
   CONFIG_FILES    = $CONFIG_FILES
   CONFIG_FILES    = $CONFIG_FILES
@@ -17588,7 +17588,7 @@ _ACEOF
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
 ac_cs_version="\\
 ac_cs_version="\\
-libcif++ config.status 1.0
+libcifpp config.status 1.0
 configured by $0, generated by GNU Autoconf 2.69,
 configured by $0, generated by GNU Autoconf 2.69,
   with options \\"\$ac_cs_config\\"
   with options \\"\$ac_cs_config\\"
 
 
@@ -18099,7 +18099,7 @@ do
     "include/cif++/Config.hpp") CONFIG_HEADERS="$CONFIG_HEADERS include/cif++/Config.hpp" ;;
     "include/cif++/Config.hpp") CONFIG_HEADERS="$CONFIG_HEADERS include/cif++/Config.hpp" ;;
     "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
     "libtool") CONFIG_COMMANDS="$CONFIG_COMMANDS libtool" ;;
     "GNUmakefile") CONFIG_FILES="$CONFIG_FILES GNUmakefile" ;;
     "GNUmakefile") CONFIG_FILES="$CONFIG_FILES GNUmakefile" ;;
-    "libcif++.pc") CONFIG_FILES="$CONFIG_FILES libcif++.pc" ;;
+    "libcifpp.pc") CONFIG_FILES="$CONFIG_FILES libcifpp.pc" ;;
 
 
   *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
   *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
   esac
   esac

configure.ac

 AC_PREREQ([2.69])
 AC_PREREQ([2.69])
 
 
-AC_INIT([libcif++], 1.0, [m.hekkelman@nki.nl])
+AC_INIT([libcifpp], 1.0, [m.hekkelman@nki.nl])
 
 
 dnl Switch to a C++ compiler, and check if it works.
 dnl Switch to a C++ compiler, and check if it works.
 AC_LANG(C++)
 AC_LANG(C++)
@@ -92,4 +92,4 @@ AX_CHECK_LIBRARY([LIBBZ2], [bzlib.h], [bz2], [],
                  [AC_MSG_ERROR([libbz2 not found - compressed files not supported])])
                  [AC_MSG_ERROR([libbz2 not found - compressed files not supported])])
 
 
 AC_OUTPUT([GNUmakefile
 AC_OUTPUT([GNUmakefile
-		   libcif++.pc])
+		   libcifpp.pc])

libcif++.pc.in → libcifpp.pc.in

@@ -3,7 +3,7 @@ exec_prefix=@exec_prefix@
 libdir=@libdir@
 libdir=@libdir@
 includedir=@includedir@
 includedir=@includedir@
 
 
-Name: libcif++
+Name: libcifpp
 Description: C++ library for the manipulation of mmCIF files.
 Description: C++ library for the manipulation of mmCIF files.
 Version: @PACKAGE_VERSION@
 Version: @PACKAGE_VERSION@
 Libs: -L${libdir} -lcif++
 Libs: -L${libdir} -lcif++

tools/symop-map-generator.cpp

@@ -24,13 +24,6 @@
  * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  * SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
  */
  */
 
 
-/*
-cd ~/projects/pdb-redo/libcif++/tools/
-clang++ -I ~/my-clipper/include -L ~/my-clipper/lib -o symop-map-generator symop-map-generator.cpp -lclipper-core
-./symop-map-generator
-
-*/
-
 #include <cassert>
 #include <cassert>
 
 
 #include <iostream>
 #include <iostream>