Commit 26d19268 by John Chodera (MSKCC)

Another try to get CLI tests to work on linux.

parent d2df9a4e
......@@ -24,7 +24,7 @@ from nose.plugins.skip import Skip, SkipTest
def run_cli(arguments, expected_output=None):
try:
output = subprocess.check_output('pdbfixer ' + arguments)
output = subprocess.check_output('pdbfixer ' + arguments, shell=True)
except CalledProcessError as e:
message = "An error return value (%s) was obtained:\n" % str(e.returncode)
message += "\n"
......
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