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open
pybind11
Commits
52715768
Commit
52715768
authored
Nov 22, 2016
by
Patrick Stewart
Committed by
Wenzel Jakob
Nov 22, 2016
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Plain Diff
Use correct itemsize when constructing a numpy dtype from a buffer_info
parent
47681c18
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Side-by-side
Showing
3 changed files
with
26 additions
and
7 deletions
+26
-7
include/pybind11/numpy.h
+5
-4
tests/test_numpy_dtypes.cpp
+18
-2
tests/test_numpy_dtypes.py
+3
-1
No files found.
include/pybind11/numpy.h
View file @
52715768
...
...
@@ -228,7 +228,8 @@ public:
explicit
dtype
(
const
buffer_info
&
info
)
{
dtype
descr
(
_dtype_from_pep3118
()(
PYBIND11_STR_TYPE
(
info
.
format
)));
m_ptr
=
descr
.
strip_padding
().
release
().
ptr
();
// If info.itemsize == 0, use the value calculated from the format string
m_ptr
=
descr
.
strip_padding
(
info
.
itemsize
?
info
.
itemsize
:
descr
.
itemsize
()).
release
().
ptr
();
}
explicit
dtype
(
const
std
::
string
&
format
)
{
...
...
@@ -281,7 +282,7 @@ private:
return
reinterpret_borrow
<
object
>
(
obj
);
}
dtype
strip_padding
()
{
dtype
strip_padding
(
size_t
itemsize
)
{
// Recursively strip all void fields with empty names that are generated for
// padding fields (as of NumPy v1.11).
if
(
!
has_fields
())
...
...
@@ -297,7 +298,7 @@ private:
auto
offset
=
spec
[
1
].
cast
<
tuple
>
()[
1
].
cast
<
pybind11
::
int_
>
();
if
(
!
len
(
name
)
&&
format
.
kind
()
==
'V'
)
continue
;
field_descriptors
.
push_back
({(
PYBIND11_STR_TYPE
)
name
,
format
.
strip_padding
(),
offset
});
field_descriptors
.
push_back
({(
PYBIND11_STR_TYPE
)
name
,
format
.
strip_padding
(
format
.
itemsize
()
),
offset
});
}
std
::
sort
(
field_descriptors
.
begin
(),
field_descriptors
.
end
(),
...
...
@@ -311,7 +312,7 @@ private:
formats
.
append
(
descr
.
format
);
offsets
.
append
(
descr
.
offset
);
}
return
dtype
(
names
,
formats
,
offsets
,
itemsize
()
);
return
dtype
(
names
,
formats
,
offsets
,
itemsize
);
}
};
...
...
tests/test_numpy_dtypes.cpp
View file @
52715768
...
...
@@ -282,11 +282,24 @@ py::list test_dtype_ctors() {
dict
[
"itemsize"
]
=
py
::
int_
(
20
);
list
.
append
(
py
::
dtype
::
from_args
(
dict
));
list
.
append
(
py
::
dtype
(
names
,
formats
,
offsets
,
20
));
list
.
append
(
py
::
dtype
(
py
::
buffer_info
((
void
*
)
0
,
1
,
"I"
,
1
)));
list
.
append
(
py
::
dtype
(
py
::
buffer_info
((
void
*
)
0
,
1
,
"T{i:a:f:b:}"
,
1
)));
list
.
append
(
py
::
dtype
(
py
::
buffer_info
((
void
*
)
0
,
sizeof
(
unsigned
int
)
,
"I"
,
1
)));
list
.
append
(
py
::
dtype
(
py
::
buffer_info
((
void
*
)
0
,
0
,
"T{i:a:f:b:}"
,
1
)));
return
list
;
}
struct
TrailingPaddingStruct
{
int32_t
a
;
char
b
;
};
py
::
dtype
trailing_padding_dtype
()
{
return
py
::
dtype
::
of
<
TrailingPaddingStruct
>
();
}
py
::
dtype
buffer_to_dtype
(
py
::
buffer
&
buf
)
{
return
py
::
dtype
(
buf
.
request
());
}
py
::
list
test_dtype_methods
()
{
py
::
list
list
;
auto
dt1
=
py
::
dtype
::
of
<
int32_t
>
();
...
...
@@ -314,6 +327,7 @@ test_initializer numpy_dtypes([](py::module &m) {
PYBIND11_NUMPY_DTYPE
(
PartialNestedStruct
,
a
);
PYBIND11_NUMPY_DTYPE
(
StringStruct
,
a
,
b
);
PYBIND11_NUMPY_DTYPE
(
EnumStruct
,
e1
,
e2
);
PYBIND11_NUMPY_DTYPE
(
TrailingPaddingStruct
,
a
,
b
);
// ... or after
py
::
class_
<
PackedStruct
>
(
m
,
"PackedStruct"
);
...
...
@@ -338,6 +352,8 @@ test_initializer numpy_dtypes([](py::module &m) {
m
.
def
(
"test_array_ctors"
,
&
test_array_ctors
);
m
.
def
(
"test_dtype_ctors"
,
&
test_dtype_ctors
);
m
.
def
(
"test_dtype_methods"
,
&
test_dtype_methods
);
m
.
def
(
"trailing_padding_dtype"
,
&
trailing_padding_dtype
);
m
.
def
(
"buffer_to_dtype"
,
&
buffer_to_dtype
);
m
.
def
(
"f_simple"
,
[](
SimpleStruct
s
)
{
return
s
.
y
*
10
;
});
m
.
def
(
"f_packed"
,
[](
PackedStruct
s
)
{
return
s
.
y
*
10
;
});
m
.
def
(
"f_nested"
,
[](
NestedStruct
s
)
{
return
s
.
a
.
y
*
10
;
});
...
...
tests/test_numpy_dtypes.py
View file @
52715768
...
...
@@ -42,7 +42,7 @@ def test_format_descriptors():
@pytest.requires_numpy
def
test_dtype
(
simple_dtype
):
from
pybind11_tests
import
print_dtypes
,
test_dtype_ctors
,
test_dtype_methods
from
pybind11_tests
import
print_dtypes
,
test_dtype_ctors
,
test_dtype_methods
,
trailing_padding_dtype
,
buffer_to_dtype
assert
print_dtypes
()
==
[
"{'names':['x','y','z'], 'formats':['?','<u4','<f4'], 'offsets':[0,4,8], 'itemsize':12}"
,
...
...
@@ -64,6 +64,8 @@ def test_dtype(simple_dtype):
assert
test_dtype_methods
()
==
[
np
.
dtype
(
'int32'
),
simple_dtype
,
False
,
True
,
np
.
dtype
(
'int32'
)
.
itemsize
,
simple_dtype
.
itemsize
]
assert
trailing_padding_dtype
()
==
buffer_to_dtype
(
np
.
zeros
(
1
,
trailing_padding_dtype
()))
@pytest.requires_numpy
def
test_recarray
(
simple_dtype
,
packed_dtype
):
...
...
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